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Dr. Susanne Plattes
Elisa Schopphoven (provisional)
phone: +49 (0)228 73-68721
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Office hours:
Thursday 10.00-12.00 h

Please check News for changing office hours!

  

During my office hours feel free to stop by the office. If you would like to schedule an appointment outside regular office hours, please call me or send me an e-mail.

 

 
Sie sind hier: Startseite Study Program Courses offered at Bonn University Applied bioinformatics

Applied bioinformatics

Aim: Introduce to the reproducible application of current scientific methods to high-throughput data analysis

We will:

  • not hide the ugly details
  • use state-of-the-art algorithms
  • work on single data sets using methods that scale to
    dozens of data sets
  • focus on technical skills
  • use high performance computing infrastructure
  • not introduce programming new algorithms
  • not discuss algorithms or introduce various methods

 

Course overview

Lectures (Monday 14 c.t.)

  • Background for the exercises
  • Sequencing, RNAseq, Expression analysis
  • Expression analysis examples

Practical exercises (Tu, We, Th 14-17)

  • from raw sequence files to interpretation
  • High performance computing and UNIX
  • RNAseq data processing
  • Expression analysis in R
  • Biological interpretation of expression data

 


Contact:
Prof. Dr. Heiko Schoof
  • Detailed course description (please click here)
  • block course 11.6.-5.7. (Mondays-Thursdays), time: 14.00 - 17.00
  • Location: Computer pool, Nußallee 17 (Mondays to be announced)
  • For more information contact Prof. Schoof (INRES - Crop Bioinformatics)
  • The course is open to PhD students from other Universities and graduate programs (in case when free seats are available).
  • Registration: Course is fully booked!!!
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